基于频率值传播的药物副作用发生频率预测方法

Prediction method of drug-side effect frequency based on frequency value propagation

  • 摘要: 确定药物副作用发生频率是药物风险−效益评估的关键问题. 随机对照临床试验方法性能有限且成本昂贵. 随着药物临床试验数据的增加,基于数据驱动计算方法研究药物−副作用关系成为可能. 文章提出一种基于药物−副作用协同传播模型的药物副作用发生频率预测方法. 该方法基于已知的药物副作用发生频率信息构建相似网络,基于已知频率信息在网络中高阶协同传播过程预测药物副作用发生频率. 此外,提出一种基于邻域学习的相似网络构建方法,进一步提升模型预测性能. 在SIDER 4.1和ADReCS 3.1中获得的真实的药物−副作用频率数据集上进行实验,相较于现有最优方法,提出的方法在均方根误差和平均绝对误差指标上分别下降了6.98%、7.23%.

     

    Abstract: Determining the frequency of drug side effects is a key issue in drug development and risk-benefit evaluation, which is usually achieved through randomized controlled clinical trials, but this method has limited performance and is expensive. As data from drug clinical trials increase, it is possible to study side effects based on data-driven computational methods. The existing drug-side effect association prediction methods mainly explore the drug-side effect association. In contrast, this paper aims to study the prediction of the frequency of drug-side effects, and quantitatively analyze and compare each side effect of each drug according to the frequency of side effects in clinical trials of drug development. In this paper, a cooperative Propagation model FPDSF (Rating Propagation Model for Predicting Frequencies of Drug-Side) based on drug-side high order similarity network is proposed. The model builds biological entity similarity networks based on known drug-side effect frequency information, and deduce the frequency of potential drug side effects through the process of high-order collaborative propagation of known frequency information in the network. In addition, a similar network improvement method based on neighborhood learning is proposed to improve the prediction performance of the model. Experiments are carried out on the real drug-side effect frequency data set obtained in SIDER 4.1 and ADRecS 3.1. Compared with the existing optimal method, the proposed method decreases by 6.98% and 7.23% in the mean square error and mean absolute error indicators respectively.

     

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